Publications of the group Biochemical Network Analysis
Showing entries 41 - 50 out of 61
2020
Széliová, D., Schoeny, H., Knez, Š., Troyer, C., Coman, C., Rampler, E., Koellensperger, G., Ahrends, R., Hann, S., Borth, N., Zanghellini, J., & Ruckerbauer, D. E. (2020). Robust analytical methods for the accurate quantification of the total biomass composition of mammalian cells. In D. Nagrath (Ed.), METABOLIC FLUX ANALYSIS IN EUKARYOTIC CELLS: METHODS AND PROTOCOLS (pp. 119-160). Humana Press, Inc.. https://doi.org/10.1007/978-1-0716-0159-4_7
2019
Iurashev, D., Schweiger, S., Jungbauer, A., & Zanghellini, J. (2019). Dissecting peak broadening in chromatography columns under non-binding conditions. Journal of Chromatography A, 1599, 55-65. https://doi.org/10.1016/j.chroma.2019.03.065
Strachan, C. R., Mueller, A. J., Ghanbari, M., Neubauer, V., Zwirzitz, B., Thalguter, S., Dziecol, M., Wetzels, S. U., Zanghellini, J., Wagner, M., & Schmitz-Esser, S. (2019). A prospective role for the rumen in generating antibiotic resistance. Web publication, Unknown publisher. https://doi.org/10.1101/729681
Dhiman, H., Gerstl, M. P., Ruckerbauer, D., Hanscho, M., Himmelbauer, H., Clarke, C., Barron, N., Zanghellini, J., & Borth, N. (2019). Genetic and Epigenetic Variation across Genes Involved in Energy Metabolism and Mitochondria of Chinese Hamster Ovary Cell Lines. Biotechnology Journal, 14(7), Article 1800681. https://doi.org/10.1002/biot.201800681
Gerstl, M. P., Müller, S., Regensburger, G., & Zanghellini, J. (2019). Flux tope analysis: studying the coordination of reaction directions in metabolic networks. Bioinformatics, 35(2), 266 - 273. Article bty550. https://doi.org/10.1093/bioinformatics/bty550
2018
Peña, D. A., Gasser, B., Zanghellini, J., Steiger, M. G., & Mattanovich, D. (2018). Metabolic engineering of Pichia pastoris. Metabolic engineering, 50, 2-15. https://doi.org/10.1016/j.ymben.2018.04.017
Mairinger, T., Wegscheider, W., Peña, D. A., Steiger, M. G., Koellensperger, G., Zanghellini, J., & Hann, S. (2018). Comprehensive assessment of measurement uncertainty in 13C-based metabolic flux experiments. Analytical and Bioanalytical Chemistry, 410(14), 3337-3348. https://doi.org/10.1007/s00216-018-1017-7
Charwat, V., Olmos Calvo, I., Rothbauer, M., Kratz, S. R. A., Jungreuthmayer, C., Zanghellini, J., Grillari, J., & Ertl, P. (2018). Combinatorial in Vitro and in Silico Approach to Describe Shear-Force Dependent Uptake of Nanoparticles in Microfluidic Vascular Models. Analytical Chemistry, 90(6), 3651-3655. https://doi.org/10.1021/acs.analchem.7b04788
Jungreuthmayer, C., Gerstl, M. P., Peña Navarro, D. A., Hanscho, M., Ruckerbauer, D. E., & Zanghellini, J. (2018). Designing optimized production hosts by metabolic modeling. In METABOLIC NETWORK RECONSTRUCTION AND MODELING: METHODS AND PROTOCOLS (Vol. 1716, pp. 371-387). Humana Press, Inc.. https://doi.org/10.1007/978-1-4939-7528-0_17
2017
Klamt, S., Regensburger, G., Gerstl, M. P., Jungreuthmayer, C., Schuster, S., Mahadevan, R., Zanghellini, J., & Müller, S. (2017). From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Computational Biology, 13(4), Article e1005409. https://doi.org/10.1371/journal.pcbi.1005409
Showing entries 41 - 50 out of 61
Activities of the group Biochemical Network Analysis
Showing entries 1 - 10 out of 135
Functional insights into Cereblon-mediated targeted protein degradation by chemical crosslinking and quantitative mass spectrometry
Stefanie Brandstetter
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Towards a novel tetraether lipid producer Haloferax volcanii
Ana Cristina Gouveia Carvalho
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Engineering Better AAV Factories: Predictive Flux Modeling Identifies HIF-1 as a Key Limiter of Productivity
Juan A. Hernandez Bort
,
Leopold Zehetner
,
Diana Szeliova
,
Jürgen Zanghellini
European Society of Gene & Cell Therapy: ESGCT Congress 32
Conference,
Poster presentation
7.10.2025 - 7.10.2025
Optimal allocation of enzyme resources in cells & Introduction to Growth Balance Analysis
Diana Szeliova
,
Hugo Dourado
CompSysBio 2025: Advanced Lecture Course on Computational Systems Biology
Lecture series, colloquium,
Talk or oral contribution
5.10.2025 - 5.10.2025
The Geometry of Cooperation: decoding microbial Interactions
Jürgen Zanghellini
,
Müller Stefan
,
Michael Predl
,
Diana Szeliova
24<sup>th </sup>Annual International Conference on Systems Biology (ICSB 2025)
Conference,
Poster presentation
5.10.2025 - 5.10.2025
Developing a XLMS Assay for the Characterization of Protein Conformations
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Klaus Rumpel
,
Jürgen Zanghellini
,
Franz Herzog
EMBO Practical Course: Integrative modelling of biomolecular interactions
Seminar/Workshop,
Poster presentation
28.9.2025 - 28.9.2025
Developing a XLMS Assay for the Characterization of Protein Conformations
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Klaus Rumpel
,
Jürgen Zanghellini
,
Franz Herzog
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
FedBatchDesigner: A user-friendly dashboard for modeling and optimizing growth-arrested fed-batch processes
Andrea Caroline Graf
,
Julian Libiseller-Egger
,
Guido Schlögel
,
Maria Jose Rimon Martinez
,
Mathias Gotsmy
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
From genome to metabolism: Pan genome-scale metabolic model reconstruction of the extremophile genus S<i>ulfolobus</i>
Maria Jose Rimon Martinez
,
Leopold Zehetner
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
Hybrid models in bioprocess optimization
Julian Libiseller-Egger
,
Andrea Graf
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Talk or oral contribution
25.9.2025 - 25.9.2025
Projects of the group Biochemical Network Analysis
Showing entries 1 - 4 out of 4
Morpho-metabolischer Fingerabdruck von Ovarialkarzinom
Del Favero, G. (Project Lead), Köllensperger, G. (Co-Lead), Gerner, C. (Co-Lead) & Zanghellini, J. (Co-Lead)
15/09/22 → 14/09/27
Project: Research funding
Prokaryote proteomics at high temperature for single cells
Zanghellini, J. (Project Lead)
1/01/24 → 31/12/27
Project: Research cooperation
Circular Bioengineering
Köllensperger, G. (Project Lead), Ludwig, R. (Co-Lead), Bismarck, A. (Co-Lead), Zanghellini, J. (Co-Lead) & Woodward, R. (Co-Lead)
1/12/24 → 30/11/29
Project: Research funding
Fungi in museums and collections: a novel, highly sensitive, AI powered sensor system for the early stage detection of fungal contaminations
Zanghellini, J. (Project Lead), Sterflinger , K. (Co-Lead) & Kellner , E. (Co-Lead)
1/04/26 → 31/03/29
Project: Research funding
Showing entries 1 - 4 out of 4