Publications of the group Biochemical Network Analysis
Showing entries 51 - 60 out of 61
2017
Sticker, D., Lechner, S., Jungreuthmayer, C., Zanghellini, J., & Ertl, P. (2017). Microfluidic Migration and Wound Healing Assay Based on Mechanically Induced Injuries of Defined and Highly Reproducible Areas. Analytical Chemistry, 89(4), 2326-2333. https://doi.org/10.1021/acs.analchem.6b03886
Nair, G., Jungreuthmayer, C., & Zanghellini, J. (2017). Optimal knockout strategies in genome-scale metabolic networks using particle swarm optimization. BMC Bioinformatics, 18(1), Article 78. https://doi.org/10.1186/s12859-017-1483-5
Gerstl, M. P., Hanscho, M., Ruckerbauer, D. E., Zanghellini, J., & Borth, N. (2017). CHOmine: an integrated data warehouse for CHO systems biology and modeling. Database, 2017(1), Article bax034. https://doi.org/10.1093/database/bax034
Galleguillos, S. N., Ruckerbauer, D., Gerstl, M. P., Borth, N., Hanscho, M., & Zanghellini, J. (2017). What can mathematical modelling say about CHO metabolism and protein glycosylation? Computational and Structural Biotechnology Journal, 15, 212-221. https://doi.org/10.1016/j.csbj.2017.01.005
2016
Hefzi, H., Ang, K. S., Hanscho, M., Bordbar, A., Ruckerbauer, D., Lakshmanan, M., Orellana, C. A., Baycin-Hizal, D., Huang, Y., Ley, D., Martinez, V. S., Kyriakopoulos, S., Jiménez, N. E., Zielinski, D. C., Quek, L. E., Wulff, T., Arnsdorf, J., Li, S., Lee, J. S., ... Lewis, N. E. (2016). A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism. Cell Systems, 3(5), 434-443.e8. https://doi.org/10.1016/j.cels.2016.10.020
Swainston, N., Smallbone, K., Hefzi, H., Dobson, P. D., Brewer, J., Hanscho, M., Zielinski, D. C., Ang, K. S., Gardiner, N. J., Gutierrez, J. M., Kyriakopoulos, S., Lakshmanan, M., Li, S., Liu, J. K., Martínez, V. S., Orellana, C. A., Quek, L. E., Thomas, A., Zanghellini, J., ... Mendes, P. (2016). Recon 2.2: from reconstruction to model of human metabolism. Metabolomics, 12(7), Article 109. https://doi.org/10.1007/s11306-016-1051-4
Zanghellini, J., Jungreuthmayer, C., & Gerstl, M. (2016). Exact quantification of cellular robustness in genome-scale metabolic networks: Part of special issue "Abstracts of the 17th European Congress on Biotechnology". New Biotechnology, 33(Supplement), 36-36. Article O11-6. https://doi.org/10.1016/j.nbt.2016.06.850
Gerstl, M. P., Jungreuthmayer, C., Müller, S., & Zanghellini, J. (2016). Which sets of elementary flux modes form thermodynamically feasible flux distributions? FEBS Journal, 283(9), 1782-1794. https://doi.org/10.1111/febs.13702
Gerstl, M. P., Klamt, S., Jungreuthmayer, C., & Zanghellini, J. (2016). Exact quantification of cellular robustness in genome-scale metabolic networks. Bioinformatics, 32(5), 730-737. https://doi.org/10.1093/bioinformatics/btv649
Jungreuthmayer, C., Neubauer, S., Mairinger, T., Zanghellini, J., & Hann, S. (2016). ICT: isotope correction toolbox. Bioinformatics, 32(1), 154-156. https://doi.org/10.1093/bioinformatics/btv514
Showing entries 51 - 60 out of 61
Activities of the group Biochemical Network Analysis
Showing entries 1 - 10 out of 135
Functional insights into Cereblon-mediated targeted protein degradation by chemical crosslinking and quantitative mass spectrometry
Stefanie Brandstetter
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Towards a novel tetraether lipid producer Haloferax volcanii
Ana Cristina Gouveia Carvalho
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Engineering Better AAV Factories: Predictive Flux Modeling Identifies HIF-1 as a Key Limiter of Productivity
Juan A. Hernandez Bort
,
Leopold Zehetner
,
Diana Szeliova
,
Jürgen Zanghellini
European Society of Gene & Cell Therapy: ESGCT Congress 32
Conference,
Poster presentation
7.10.2025 - 7.10.2025
Optimal allocation of enzyme resources in cells & Introduction to Growth Balance Analysis
Diana Szeliova
,
Hugo Dourado
CompSysBio 2025: Advanced Lecture Course on Computational Systems Biology
Lecture series, colloquium,
Talk or oral contribution
5.10.2025 - 5.10.2025
The Geometry of Cooperation: decoding microbial Interactions
Jürgen Zanghellini
,
Müller Stefan
,
Michael Predl
,
Diana Szeliova
24<sup>th </sup>Annual International Conference on Systems Biology (ICSB 2025)
Conference,
Poster presentation
5.10.2025 - 5.10.2025
Developing a XLMS Assay for the Characterization of Protein Conformations
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Klaus Rumpel
,
Jürgen Zanghellini
,
Franz Herzog
EMBO Practical Course: Integrative modelling of biomolecular interactions
Seminar/Workshop,
Poster presentation
28.9.2025 - 28.9.2025
Developing a XLMS Assay for the Characterization of Protein Conformations
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Klaus Rumpel
,
Jürgen Zanghellini
,
Franz Herzog
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
FedBatchDesigner: A user-friendly dashboard for modeling and optimizing growth-arrested fed-batch processes
Andrea Caroline Graf
,
Julian Libiseller-Egger
,
Guido Schlögel
,
Maria Jose Rimon Martinez
,
Mathias Gotsmy
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
From genome to metabolism: Pan genome-scale metabolic model reconstruction of the extremophile genus S<i>ulfolobus</i>
Maria Jose Rimon Martinez
,
Leopold Zehetner
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
Hybrid models in bioprocess optimization
Julian Libiseller-Egger
,
Andrea Graf
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Talk or oral contribution
25.9.2025 - 25.9.2025
Projects of the group Biochemical Network Analysis
Showing entries 1 - 4 out of 4
Morpho-metabolischer Fingerabdruck von Ovarialkarzinom
Del Favero, G. (Project Lead), Köllensperger, G. (Co-Lead), Gerner, C. (Co-Lead) & Zanghellini, J. (Co-Lead)
15/09/22 → 14/09/27
Project: Research funding
Prokaryote proteomics at high temperature for single cells
Zanghellini, J. (Project Lead)
1/01/24 → 31/12/27
Project: Research cooperation
Circular Bioengineering
Köllensperger, G. (Project Lead), Ludwig, R. (Co-Lead), Bismarck, A. (Co-Lead), Zanghellini, J. (Co-Lead) & Woodward, R. (Co-Lead)
1/12/24 → 30/11/29
Project: Research funding
Fungi in museums and collections: a novel, highly sensitive, AI powered sensor system for the early stage detection of fungal contaminations
Zanghellini, J. (Project Lead), Sterflinger , K. (Co-Lead) & Kellner , E. (Co-Lead)
1/04/26 → 31/03/29
Project: Research funding
Showing entries 1 - 4 out of 4