Publications of the group Biochemical Network Analysis
Showing entries 1 - 10 out of 62
2026
Müller, S., Predl, M., Széliová, D., & Zanghellini, J. (2026). Elementary vectors reveal minimal interactions in microbial communities. Journal of the Royal Society Interface, 23(239), Article 20250869 . https://doi.org/10.1098/rsif.2025.0869
Economic Cell Collective, Szeliova, D., & Müller, S. (2026). Economic Principles in Cell Biology. https://doi.org/10.5281/zenodo.18088026
Kushwaha, M., Liebermeister, W., Noor, E., Sechkar, K., & Szeliova, D. (2026). Benefit and cost of a protein. In Economic Principles in Cell Biology (Textbook ) https://doi.org/10.5281/zenodo.18087995
2025
Karasová, M., Jobst, M., Framke, D., Bergen, J., Meier-Menches, S., Keppler, B., Koellensperger, G., Zanghellini, J., Gerner, C., & Del Favero, G. (2025). Mechanical cues rewire lipid metabolism and support chemoresistance in epithelial ovarian cancer cell lines OVCAR3 and SKOV3. Cell communication and signaling, 23(1), Article 193. https://doi.org/10.1186/s12964-025-02144-9
Zehetner, L., Széliová, D., Kraus, B., Hernandez Bort, J. A., & Zanghellini, J. (2025). Multi-omics driven genome-scale metabolic modeling improves viral vector yield in HEK293. Metabolic engineering, 91, 103-118. https://doi.org/10.1016/j.ymben.2025.03.011
Graf, A. C., Libiseller-Egger, J., Gotsmy, M., & Zanghellini, J. (2025). Fedbatchdesigner: A User-Friendly Dashboard for Modeling and Optimizing Growth-Arrested Fed-Batch Processes. ACS Synthetic Biology, 14(8), 3252-3257. https://doi.org/10.1021/acssynbio.5c00357
Klamt, S., Zanghellini, J., & Von Kamp, A. (2025). Minimal cut sets in metabolic networks: From conceptual foundations to applications in metabolic engineering and biomedicine. Briefings in bioinformatics, 26(2), Article bbaf188. https://doi.org/10.1093/bib/bbaf188
Lázaro, J., Joven, T., Széliová, D., Zanghellini, J., & Júlvez, J. (2025). Multi-scale design and optimization of antibody production via flexible nets. Computational and Structural Biotechnology Journal, 27, 1498-1510. https://doi.org/10.1016/j.csbj.2025.03.040
Grigaitis, P., & Szeliova, D. (2025). An inventory of cell components. In Economic Principles in Cell Biology (Textbook ) https://doi.org/10.5281/zenodo.14562695
2024
Széliová, D., Müller, S., & Zanghellini, J. (2024). Costs of ribosomal RNA stabilization affect ribosome composition at maximum growth rate. Communications Biology, 7(1), Article 196. https://doi.org/10.1038/s42003-024-05815-4
Activities of the group Biochemical Network Analysis
Showing entries 101 - 110 out of 145
Sulfate limitation increases specific plasmid DNA yield by 30% in <i>E. coli</i> fed-batch processes
Mathias Gotsmy
,
Florian Strobl
,
Florian Weiß
,
Petra Gruber
,
Barbara Kraus
,
Jürgen Mairhofer
,
Jürgen Zanghellini
Vienna Doctoral School in Chemistry – DoSChem Panel B Retreat 2023
Conference,
Poster presentation
19.4.2023 - 19.4.2023
specXplore: An interactive dashboard for flexible exploration of mass spectral data
Kevin Mildau
,
Henry Ehlers
,
Christoph Bueschl
,
Justin J.J. van der Hooft
,
Jürgen Zanghellini
ANAKON 2023
Conference,
Poster presentation
11.4.2023 - 11.4.2023
specXplore: An interactive dashboard for flexible exploration of mass spectral data
Kevin Mildau
,
Justin J.J. van der Hooft
,
Christoph Bueschl
,
Jürgen Zanghellini
ANAKON 2023
Conference,
Poster presentation
30.3.2023 - 30.3.2023
specXplore: a tool for interactive and dynamic exploration of mass spectral embeddings and graphs
Kevin Mildau
,
Henry Ehlers
,
Christoph Bueschl
,
Justin J.J. van der Hooft
,
Jürgen Zanghellini
NMC Online Benelux Seminar Data Analyses Computational Metabolomics
Seminar/Workshop,
Talk or oral contribution
30.3.2023 - 30.3.2023
Carbon – Cycle Economy Demonstration (C-CED): operational concepts
Jürgen Zanghellini
Workshop Carbon – Cycle Economy Demonstration
Seminar/Workshop,
Talk or oral contribution
14.3.2023 - 14.3.2023
An interactive workflow for single-cell multiplexed image analysis
Gabriel Braun
,
Martin Schaier
,
Anna Schöberl
,
Sarah Theiner
,
Christoph Bueschl
,
Jürgen Zanghellini
,
Gunda Köllensperger
European Winter Conference on Plasma Spectrochemistry (EWCPS2023)
Conference,
Talk or oral contribution
29.1.2023 - 29.1.2023
Analyzing Optimal and Non-Optimal Resource Allocations in Whole-Cell Models
Diana Szeliova
,
Müller Stefan
,
Jürgen Zanghellini
21st International Conference on Systems Biology (ICSB 2022)
Conference,
Poster presentation
8.10.2022 - 8.10.2022
Non-invasive, quantitative finger sweat metabolomics enables assessing dynamic metabolic patterns in humans
Mathias Gotsmy
,
Julia Brunmair
,
Andrea Bileck
,
Astrid Slany
,
Samuel Matthias Meier-Menches
,
Christopher Gerner
,
Jürgen Zanghellini
21st International Conference on Systems Biology (ICSB 2022)
Conference,
Poster presentation
8.10.2022 - 8.10.2022
Analyzing Optimal and Non-Optimal Resource Allocations in Whole-Cell Models
Diana Szeliova
,
Müller Stefan
,
Jürgen Zanghellini
8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022)
Conference,
Talk or oral contribution
28.9.2022 - 28.9.2022
HEKing Bioprocesses at Cellular Level to Optimize VLP-Production
Leopold Zehetner
,
Diana Szeliova
,
Juan A. Hernandez Bort
,
Jürgen Zanghellini
8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022)
Conference,
Poster presentation
28.9.2022 - 28.9.2022
Showing entries 101 - 110 out of 145
Projects of the group Biochemical Network Analysis
Showing entries 1 - 4 out of 4
Morpho-metabolischer Fingerabdruck von Ovarialkarzinom
Del Favero, G. (Project Lead), Köllensperger, G. (Co-Lead), Gerner, C. (Co-Lead) & Zanghellini, J. (Co-Lead)
15/09/22 → 14/09/27
Project: Research funding
Prokaryote proteomics at high temperature for single cells
Zanghellini, J. (Project Lead)
1/01/24 → 31/12/27
Project: Research cooperation
Circular Bioengineering
Köllensperger, G. (Project Lead), Ludwig, R. (Co-Lead), Bismarck, A. (Co-Lead), Zanghellini, J. (Co-Lead) & Woodward, R. (Co-Lead)
1/12/24 → 30/11/29
Project: Research funding
Fungi in museums and collections: a novel, highly sensitive, AI powered sensor system for the early stage detection of fungal contaminations
Zanghellini, J. (Project Lead), Sterflinger , K. (Co-Lead) & Kellner , E. (Co-Lead)
1/04/26 → 31/03/29
Project: Research funding
Showing entries 1 - 4 out of 4