Publications of the group Biochemical Network Analysis

2021

Herrmann, H. A., Rusz, M., Baier, D., Jakupec, M. A., Keppler, B. K., Berger, W., Koellensperger, G., & Zanghellini, J. (2021). Thermodynamic Genome-Scale Metabolic Modeling of Metallodrug Resistance in Colorectal Cancer. Cancers, 13(16), [4130]. https://doi.org/10.3390/cancers13164130

Szeliova, D., Stor, J., Thiel, I., Weinguny, M., Hanscho, M., Lhota, G., Borth, N., Zanghellini, J., Ruckerbauer, D. E., & Rocha, I. (2021). Inclusion of maintenance energy improves the intracellular flux predictions of CHO. PLoS Computational Biology, 17(6), [e1009022]. https://doi.org/10.1371/journal.pcbi.1009022

Széliová, D., Iurashev, D., Ruckerbauer, D. E., Koellensperger, G., Borth, N., Melcher, M., & Zanghellini, J. (2021). Error propagation in constraint-based modeling of Chinese hamster ovary cells. Biotechnology Journal, 16(4), [2000320]. https://doi.org/10.1002/biot.202000320

2020

Libiseller-Egger, J., Coltman, B., Gerstl, M. P., & Zanghellini, J. (2020). Environmental flexibility does not explain metabolic robustness. Npj systems biology and applications, 6(1), [39]. https://doi.org/10.1038/s41540-020-00155-5

Széliová, D., Ruckerbauer, D. E., Galleguillos, S. N., Petersen, L. B., Natter, K., Hanscho, M., Troyer, C., Causon, T., Schoeny, H., Christensen, H. B., Lee, D. Y., Lewis, N. E., Koellensperger, G., Hann, S., Nielsen, L. K., Borth, N., & Zanghellini, J. (2020). What CHO is made of: Variations in the biomass composition of Chinese hamster ovary cell lines. Metabolic engineering, 61, 288-300. https://doi.org/10.1016/j.ymben.2020.06.002

Zwirzitz, B., Wetzels, S. U., Dixon, E. D., Stessl, B., Zaiser, A., Rabanser, I., Thalguter, S., Pinior, B., Roch, F-F., Strachan, C., Zanghellini, J., Dzieciol, M., Wagner, M., & Selberherr, E. (2020). The sources and transmission routes of microbial populations throughout a meat processing facility. Npj biofilms and microbiomes, 6(1), [26]. https://doi.org/10.1038/s41522-020-0136-z

Hamdi, A., Szeliova, D., Ruckerbauer, D. E., Rocha, I., Borth, N., & Zanghellini, J. (2020). Key Challenges in Designing CHO Chassis Platforms. Group Processes and Intergroup Relations, 8(6), [643]. https://doi.org/10.3390/pr8060643

Burgard, J., Grünwald-Gruber, C., Altmann, F., Zanghellini, J., Valli, M., Mattanovich, D., & Gasser, B. (2020). The secretome of Pichia pastoris in fed-batch cultivations is largely independent of the carbon source but changes quantitatively over cultivation time. Microbial Biotechnology, 13(2), 479-494. https://doi.org/10.1111/1751-7915.13499

2019

Strachan, C. R. (Author), Mueller, A. J. (Author), Ghanbari, M. (Author), Neubauer, V. (Author), Zwirzitz, B. (Author), Thalguter, S. (Author), Dziecol, M. (Author), Wetzels, S. U. (Author), Zanghellini, J. (Author), Wagner, M. (Author), & Schmitz-Esser, S. (Author). (2019). A prospective role for the rumen in generating antibiotic resistance. Web publication, Unknown publisher. https://doi.org/10.1101/729681

2018

Mairinger, T., Wegscheider, W., Peña, D. A., Steiger, M. G., Koellensperger, G., Zanghellini, J., & Hann, S. (2018). Comprehensive assessment of measurement uncertainty in ¹³C-based metabolic flux experiments. Analytical and Bioanalytical Chemistry, 410(14), 3337-3348. https://doi.org/10.1007/s00216-018-1017-7