Publications of the group Biochemical Network Analysis
Showing entries 1 - 10 out of 62
2026
Müller, S., Predl, M., Széliová, D., & Zanghellini, J. (2026). Elementary vectors reveal minimal interactions in microbial communities. Journal of the Royal Society Interface. https://doi.org/10.1098/rsif.2025.0869
Economic Cell Collective, Szeliova, D., & Müller, S. (2026). Economic Principles in Cell Biology. https://doi.org/10.5281/zenodo.18088026
Kushwaha, M., Liebermeister, W., Noor, E., Sechkar, K., & Szeliova, D. (2026). Benefit and cost of a protein. In Economic Principles in Cell Biology (Textbook ) https://doi.org/10.5281/zenodo.18087995
2025
Karasová, M., Jobst, M., Framke, D., Bergen, J., Meier-Menches, S., Keppler, B., Koellensperger, G., Zanghellini, J., Gerner, C., & Del Favero, G. (2025). Mechanical cues rewire lipid metabolism and support chemoresistance in epithelial ovarian cancer cell lines OVCAR3 and SKOV3. Cell communication and signaling, 23(1), Article 193. https://doi.org/10.1186/s12964-025-02144-9
Zehetner, L., Széliová, D., Kraus, B., Hernandez Bort, J. A., & Zanghellini, J. (2025). Multi-omics driven genome-scale metabolic modeling improves viral vector yield in HEK293. Metabolic engineering, 91, 103-118. https://doi.org/10.1016/j.ymben.2025.03.011
Graf, A. C., Libiseller-Egger, J., Gotsmy, M., & Zanghellini, J. (2025). Fedbatchdesigner: A User-Friendly Dashboard for Modeling and Optimizing Growth-Arrested Fed-Batch Processes. ACS Synthetic Biology, 14(8), 3252-3257. https://doi.org/10.1021/acssynbio.5c00357
Klamt, S., Zanghellini, J., & Von Kamp, A. (2025). Minimal cut sets in metabolic networks: From conceptual foundations to applications in metabolic engineering and biomedicine. Briefings in bioinformatics, 26(2), Article bbaf188. https://doi.org/10.1093/bib/bbaf188
Lázaro, J., Joven, T., Széliová, D., Zanghellini, J., & Júlvez, J. (2025). Multi-scale design and optimization of antibody production via flexible nets. Computational and Structural Biotechnology Journal, 27, 1498-1510. https://doi.org/10.1016/j.csbj.2025.03.040
Grigaitis, P., & Szeliova, D. (2025). An inventory of cell components. In Economic Principles in Cell Biology (Textbook ) https://doi.org/10.5281/zenodo.14562695
2024
Széliová, D., Müller, S., & Zanghellini, J. (2024). Costs of ribosomal RNA stabilization affect ribosome composition at maximum growth rate. Communications Biology, 7(1), Article 196. https://doi.org/10.1038/s42003-024-05815-4
Activities of the group Biochemical Network Analysis
Showing entries 1 - 10 out of 145
Confessiones: what works and what doesn't
Jürgen Zanghellini
MATOMIC Meeting
Conference,
Talk or oral contribution
19.5.2026 - 19.5.2026
A Geometric View of Community Metabolism
Michael Predl
,
Stefan Müller
,
Diana Szeliova
,
Jürgen Zanghellini
10th Conference on Constraint-Based Reconstruction and Analysis<br/>(COBRA2026)
Conference,
Talk or oral contribution
17.3.2026 - 17.3.2026
Genome-scale metabolic modeling of the fungal genus Komagataella
Leopold Zehetner
,
Zelenka Judith
,
Jürgen Zanghellini
10th Conference on Constraint-Based Reconstruction and Analysis<br/>(COBRA2026)
Conference,
Poster presentation
17.3.2026 - 17.3.2026
Pan genome-scale metabolic modeling of<i> Sulfolobus</i> genus reveals medium - dependent metabolic diversity
Maria Jose Rimon Martinez
,
Ana Cristina Gouveia Carvalho
,
Leopold Zehetner
,
Julian Quehenberger
,
Jürgen Zanghellini
10th Conference on Constraint-Based Reconstruction and Analysis<br/>(COBRA2026)
Conference,
Poster presentation
17.3.2026 - 17.3.2026
Design of multi-stage continuous bioprocesses
Andrea Caroline Graf
,
Julian Libiseller-Egger
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
FluxSmooth: Fitting Rates with Bayes
Guido Schlögel
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Functional insights into Cereblon-mediated targeted protein degradation by chemical crosslinking and quantitative mass spectrometry
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Klaus Rumpel
,
Jürgen Zanghellini
,
Franz Herzog
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
hybrax – A comprehensive framework for bioprocess hybrid modeling
Julian Libiseller-Egger
,
Andrea Caroline Graf
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Pan genome-scale metabolic modeling of<i> Sulfolobus</i> genus reveals medium - dependent metabolic diversity
Maria Jose Rimon Martinez
,
Ana Cristina Gouveia Carvalho
,
Leopold Zehetner
,
Julian Quehenberger
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Towards a novel tetraether lipid producer <i>Haloferax volcanii</i>
Ana Cristina Gouveia Carvalho
,
Dinu Ciobanu
,
Eveline Peeters
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Projects of the group Biochemical Network Analysis
Showing entries 1 - 4 out of 4
Morpho-metabolischer Fingerabdruck von Ovarialkarzinom
Del Favero, G. (Project Lead), Köllensperger, G. (Co-Lead), Gerner, C. (Co-Lead) & Zanghellini, J. (Co-Lead)
15/09/22 → 14/09/27
Project: Research funding
Prokaryote proteomics at high temperature for single cells
Zanghellini, J. (Project Lead)
1/01/24 → 31/12/27
Project: Research cooperation
Circular Bioengineering
Köllensperger, G. (Project Lead), Ludwig, R. (Co-Lead), Bismarck, A. (Co-Lead), Zanghellini, J. (Co-Lead) & Woodward, R. (Co-Lead)
1/12/24 → 30/11/29
Project: Research funding
Fungi in museums and collections: a novel, highly sensitive, AI powered sensor system for the early stage detection of fungal contaminations
Zanghellini, J. (Project Lead), Sterflinger , K. (Co-Lead) & Kellner , E. (Co-Lead)
1/04/26 → 31/03/29
Project: Research funding
Showing entries 1 - 4 out of 4