Publications of the group Biochemical Network Analysis
Showing entries 1 - 10 out of 63
2026
Müller, S., Predl, M., Széliová, D., & Zanghellini, J. (2026). Elementary vectors reveal minimal interactions in microbial communities. Journal of the Royal Society Interface, 23(239), Article 20250869 . https://doi.org/10.1098/rsif.2025.0869
Di Giusto, P., Choi, D. H., Antonakoudis, A., Duraikannan, V. G., Craveur, P., Cowie, N. L., Ganapathy, T., Ramesh, K., Benavidez-López, S., Orellana, C. A., Jiménez, N. E., Dworkin, L. A., Morrissey, J., Marin de Mas, I., Strain, B., Valdez-Cruz, N. A., Trujillo-Roldán, M. A., Marzluf, J., Martínez, V. S., ... Lewis, N. E. (2026). A community reconstruction of Chinese hamster metabolism and structural systems biology elucidate metabolic rewiring in lactate-free CHO cells. Cell Systems, 17(6), Article 101574. https://doi.org/10.1016/j.cels.2026.101574
Economic Cell Collective, Szeliova, D., & Müller, S. (2026). Economic Principles in Cell Biology. https://doi.org/10.5281/zenodo.18088026
Kushwaha, M., Liebermeister, W., Noor, E., Sechkar, K., & Szeliova, D. (2026). Benefit and cost of a protein. In Economic Principles in Cell Biology (Textbook ) https://doi.org/10.5281/zenodo.18087995
2025
Karasová, M., Jobst, M., Framke, D., Bergen, J., Meier-Menches, S., Keppler, B., Koellensperger, G., Zanghellini, J., Gerner, C., & Del Favero, G. (2025). Mechanical cues rewire lipid metabolism and support chemoresistance in epithelial ovarian cancer cell lines OVCAR3 and SKOV3. Cell communication and signaling, 23(1), Article 193. https://doi.org/10.1186/s12964-025-02144-9
Zehetner, L., Széliová, D., Kraus, B., Hernandez Bort, J. A., & Zanghellini, J. (2025). Multi-omics driven genome-scale metabolic modeling improves viral vector yield in HEK293. Metabolic engineering, 91, 103-118. https://doi.org/10.1016/j.ymben.2025.03.011
Graf, A. C., Libiseller-Egger, J., Gotsmy, M., & Zanghellini, J. (2025). Fedbatchdesigner: A User-Friendly Dashboard for Modeling and Optimizing Growth-Arrested Fed-Batch Processes. ACS Synthetic Biology, 14(8), 3252-3257. https://doi.org/10.1021/acssynbio.5c00357
Klamt, S., Zanghellini, J., & Von Kamp, A. (2025). Minimal cut sets in metabolic networks: From conceptual foundations to applications in metabolic engineering and biomedicine. Briefings in bioinformatics, 26(2), Article bbaf188. https://doi.org/10.1093/bib/bbaf188
Lázaro, J., Joven, T., Széliová, D., Zanghellini, J., & Júlvez, J. (2025). Multi-scale design and optimization of antibody production via flexible nets. Computational and Structural Biotechnology Journal, 27, 1498-1510. https://doi.org/10.1016/j.csbj.2025.03.040
Grigaitis, P., & Szeliova, D. (2025). An inventory of cell components. In Economic Principles in Cell Biology (Textbook ) https://doi.org/10.5281/zenodo.14562695
Activities of the group Biochemical Network Analysis
Showing entries 41 - 50 out of 145
The Metabolic guide to Space Survival
Kristina Pulejkova
,
Diethard Mattanovich
,
Matthias Steiger
,
Jürgen Zanghellini
,
Özge Ata
,
Claudia Schnugg
,
Sonja Schachinger
The Metabolic guide to Space Survival
Exhibition,
Organisation of ...
10.5.2025 - 31.7.2025
Chemical crosslinking and quantitative mass spectrometry: Insights beyond distance information
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Franz Herzog
,
Jürgen Zanghellini
Vienna Doctoral School in Chemistry – DoSChem: Panel B Retreat 2025
Conference,
Talk or oral contribution
2.4.2025 - 2.4.2025
Computational modeling of protein interactions using chemical crosslinking and mass spectrometry
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Jürgen Zanghellini
,
Franz Herzog
Vienna Doctoral School in Chemistry – DoSChem: Panel B Retreat 2025
Conference,
Talk or oral contribution
2.4.2025 - 2.4.2025
FedBatchDesigner: A user-friendly dashboard for modeling and optimizing growth-arrested fed-batch processes
Julian Libiseller-Egger
,
Andrea Graf
,
Guido Schlögel
,
Maria Jose Rimon Martinez
,
Mathias Gotsmy
,
Jürgen Zanghellini
Vienna Doctoral School in Chemistry – DoSChem: Panel B Retreat 2025
Conference,
Poster presentation
2.4.2025 - 2.4.2025
From genome to metabolism: Pan genome-scale metabolic model reconstruction of the extremophile genus <i>Sulfolobus</i>
Maria Jose Rimon Martinez
,
Leopold Zehetner
,
Jürgen Zanghellini
Vienna Doctoral School in Chemistry – DoSChem: Panel B Retreat 2025
Conference,
Poster presentation
2.4.2025 - 2.4.2025
OptFed: Advancing Bioprocess Control with Data-Driven Optimization
Guido Schlögel
,
Rüdiger Lück
,
Stefan Kittler
,
Oliver Spadiut
,
Julian Kopp
,
Mathias Gotsmy
,
Jürgen Zanghellini
Vienna Doctoral School in Chemistry – DoSChem: Panel B Retreat 2025
Conference,
Talk or oral contribution
2.4.2025 - 2.4.2025
Towards a novel tetraether lipid producer <i>Haloferax volcanii</i>
Ana Cristina Gouveia Carvalho
,
Eveline Peeters
,
Jürgen Zanghellini
,
Julian Quehenberger
Vienna Doctoral School in Chemistry – DoSChem: Panel B Retreat 2025
Conference,
Poster presentation
2.4.2025 - 2.4.2025
Modeling of AAV Production Processes using HEK293-specific GSMMs
Leopold Zehetner
,
Jürgen Zanghellini
Webinar Series: Modeling and Simulation in Biotechnology and Biochemical Engineering
Seminar/Workshop,
Talk or oral contribution
24.3.2025 - 24.3.2025
Improving HEK293-based AAV production using GSMMs and a multi-omics approach
Leopold Zehetner
,
Diana Szeliova
,
Barbara Kraus
,
Juan A. Hernandez Bort
,
Jürgen Zanghellini
35th MassSpec Forum Vienna
Conference,
Poster presentation
19.2.2025 - 19.2.2025
Chemical crosslinking and quantitative mass spectrometry: Insights beyond distance information
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Franz Herzog
,
Jürgen Zanghellini
1. Science Parade am Campus Krems – Entdecken, Vernetzen, Kooperieren
Conference,
Talk or oral contribution
5.2.2025 - 5.2.2025
Showing entries 41 - 50 out of 145
Projects of the group Biochemical Network Analysis
Showing entries 1 - 4 out of 4
Morpho-metabolischer Fingerabdruck von Ovarialkarzinom
Del Favero, G. (Project Lead), Köllensperger, G. (Co-Lead), Gerner, C. (Co-Lead) & Zanghellini, J. (Co-Lead)
15/09/22 → 14/09/27
Project: Research funding
Prokaryote proteomics at high temperature for single cells
Zanghellini, J. (Project Lead)
1/01/24 → 31/12/27
Project: Research cooperation
Circular Bioengineering
Köllensperger, G. (Project Lead), Ludwig, R. (Co-Lead), Bismarck, A. (Co-Lead), Zanghellini, J. (Co-Lead) & Woodward, R. (Co-Lead)
1/12/24 → 30/11/29
Project: Research funding
Fungi in museums and collections: a novel, highly sensitive, AI powered sensor system for the early stage detection of fungal contaminations
Zanghellini, J. (Project Lead), Sterflinger , K. (Co-Lead) & Kellner , E. (Co-Lead)
1/04/26 → 31/03/29
Project: Research funding
Showing entries 1 - 4 out of 4