Publications of the group Biochemical Network Analysis
2024
Sedlmayr, V. L., Széliová, D., De Kock, V., Gansemans, Y., Van Nieuwerburgh, F., Peeters, E., Quehenberger, J., Zanghellini, J., & Spadiut, O. (2024). Impact of nutrient excess on physiology and metabolism of Sulfolobus acidocaldarius. Frontiers in Microbiology, 15, Article 1475385. https://doi.org/10.3389/fmicb.2024.1475385
2023
Gotsmy, M., Strobl, F., Weiß, F., Gruber, P., Kraus, B., Mairhofer, J., & Zanghellini, J. (2023). Sulfate limitation increases specific plasmid DNA yield and productivity in E. coli fed-batch processes. Microbial Cell Factories, 22(1), Article 242. https://doi.org/10.1186/s12934-023-02248-2
Zehetner, L., Széliová, D., Kraus, B., Graninger, M., Zanghellini, J., & Hernandez Bort, J. A. (2023). Optimizing VLP production in gene therapy: Opportunities and challenges for in silico modeling. Biotechnology Journal, 18(7), Article 2200636. https://doi.org/10.1002/biot.202200636
Buchner, B., Clement, T. J., de Groot, D. H., & Zanghellini, J. (2023). ecmtool: fast and memory-efficient enumeration of elementary conversion modes. Bioinformatics (Oxford, England), 39(3), Article btad095. https://doi.org/10.1093/bioinformatics/btad095
Schaier, M., Theiner, S., Baier, D., Braun, G., Berger, W., & Koellensperger, G. (2023). Multiparametric Tissue Characterization Utilizing the Cellular Metallome and Immuno-Mass Spectrometry Imaging. JACS Au, 3(2), 419-428. https://doi.org/10.1021/jacsau.2c00571
2022
Schoeberl, A., Gutmann, M., Theiner, S., Corte-Rodriguez, M., Braun, G., Vician, P., Berger, W., & Koellensperger, G. (2022). The copper transporter CTR1 and cisplatin accumulation at the single-cell level by LA-ICP-TOFMS. Frontiers in Molecular Biosciences, 9, Article 1055356. https://doi.org/10.3389/fmolb.2022.1055356
El Abiead, Y., Bueschl, C., Panzenboeck, L., Wang, M., Doppler, M., Seidl, B., Zanghellini, J., Dorrestein, P. C., & Koellensperger, G. (2022). Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets. Analytica Chimica Acta, 1229, Article 340352. https://doi.org/10.1016/j.aca.2022.340352
Mildau, K., van der Hooft, J. J. J., Flasch, M., Warth, B., El Abiead, Y., Koellensperger, G., Zanghellini, J., & Bueschl, C. (2022). Homologue Series Detection and Management in LC-MS data with homologueDiscoverer. Bioinformatics, 38(22), 5139-5140. Article btac647. https://doi.org/10.1093/bioinformatics/btac647
Gotsmy, M., Brunmair, J., Bueschl, C., Gerner, C., & Zanghellini, J. (2022). Probabilistic quotient's work and pharmacokinetics' contribution: countering size effect in metabolic time series measurements. BMC Bioinformatics, 23(1), Article 379. https://doi.org/10.1186/s12859-022-04918-1
Bueschl, C., Doppler, M., Varga, E., Seidl, B., Flasch, M., Warth, B., & Zanghellini, J. (2022). PeakBot: machine-learning-based chromatographic peak picking. Bioinformatics, 38(13), 3422-3428. https://doi.org/10.1093/bioinformatics/btac344