Publications of the group Biochemical Network Analysis
2024
Gotsmy, M., Giannari, D., Mahadevan, R., & Zanghellini, J. (2024). Optimizing Fed-Batch Processes with Dynamic Control Flux Balance Analysis. IFAC-PapersOnLine, 58(23), 109-114. https://doi.org/10.1016/j.ifacol.2024.10.019
Braun, G., Schaier, M., Werner, P., Theiner, S., Zanghellini, J., Wisgrill, L., Fyhrquist, N., & Koellensperger, G. (2024). MeXpose─A Modular Imaging Pipeline for the Quantitative Assessment of Cellular Metal Bioaccumulation. JACS Au, 4(6), 2197-2210. https://doi.org/10.1021/jacsau.4c00154
Zehetner, L., Széliová, D., Kraus, B., Hernandez Bort, J. A., & Zanghellini, J. (2024). Logistic PCA explains differences between genome-scale metabolic models in terms of metabolic pathways. PLoS Computational Biology, 20(6), Article e1012236. https://doi.org/10.1371/journal.pcbi.1012236
Mildau, K., Ehlers, H., Oesterle, I., Pristner, M., Warth, B., Doppler, M., Bueschl, C., Zanghellini, J., & van der Hooft, J. J. J. (2024). Tailored Mass Spectral Data Exploration Using the SpecXplore Interactive Dashboard. Analytical Chemistry, 96(15), 5798-5806. https://doi.org/10.1021/acs.analchem.3c04444
Predl, M., Mießkes, M., Rattei, T., & Zanghellini, J. (2024). PyCoMo: a python package for community metabolic model creation and analysis. Bioinformatics (Oxford, England), 40(4), Article btae153. https://doi.org/10.1093/bioinformatics/btae153
Coltman, B. L., Rebnegger, C., Gasser, B., & Zanghellini, J. (2024). Characterising the metabolic rewiring of extremely slow growing Komagataella phaffii. Microbial Biotechnology, 17(1), Article e14386. https://doi.org/10.1111/1751-7915.14386
Lázaro, J., Júlvez, J., & Zanghellini, J. (2024). Flexible Nets to Improve GEM Cell Factories by Combining Kinetic and Proteomics Data. In R. Gori, P. Milazzo, & M. Tribastone (Eds.), Computational Methods in Systems Biology - 22nd International Conference, CMSB 2024, Proceedings (Vol. 14971, pp. 137-154). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-71671-3_11
Sedlmayr, V. L., Széliová, D., De Kock, V., Gansemans, Y., Van Nieuwerburgh, F., Peeters, E., Quehenberger, J., Zanghellini, J., & Spadiut, O. (2024). Impact of nutrient excess on physiology and metabolism of Sulfolobus acidocaldarius. Frontiers in Microbiology, 15, Article 1475385. https://doi.org/10.3389/fmicb.2024.1475385
2023
Gotsmy, M., Strobl, F., Weiß, F., Gruber, P., Kraus, B., Mairhofer, J., & Zanghellini, J. (2023). Sulfate limitation increases specific plasmid DNA yield and productivity in E. coli fed-batch processes. Microbial Cell Factories, 22(1), Article 242. https://doi.org/10.1186/s12934-023-02248-2
Zehetner, L., Széliová, D., Kraus, B., Graninger, M., Zanghellini, J., & Hernandez Bort, J. A. (2023). Optimizing VLP production in gene therapy: Opportunities and challenges for in silico modeling. Biotechnology Journal, 18(7), Article 2200636. https://doi.org/10.1002/biot.202200636