Publications of the group Biochemical Network Analysis
Showing entries 11 - 20 out of 61
2024
Gotsmy, M., Erian, A., Marx, H., Pflügl, S., & Zanghellini, J. (2024). Predictive dynamic control accurately maps the design space for 2,3-butanediol production. Computational and Structural Biotechnology Journal, 23, 3850-3858. https://doi.org/10.1016/j.csbj.2024.10.016
Mildau, K., Büschl, C., Zanghellini, J., & Van Der Hooft, J. J. J. (2024). Combined LC-MS/MS feature grouping, statistical prioritization, and interactive networking in msFeaST. Bioinformatics, 40(10), Article btae584. https://doi.org/10.1093/bioinformatics/btae584
Gotsmy, M., Giannari, D., Mahadevan, R., & Zanghellini, J. (2024). Optimizing Fed-Batch Processes with Dynamic Control Flux Balance Analysis. IFAC-PapersOnLine, 58(23), 109-114. https://doi.org/10.1016/j.ifacol.2024.10.019
Braun, G., Schaier, M., Werner, P., Theiner, S., Zanghellini, J., Wisgrill, L., Fyhrquist, N., & Koellensperger, G. (2024). MeXpose─A Modular Imaging Pipeline for the Quantitative Assessment of Cellular Metal Bioaccumulation. JACS Au, 4(6), 2197-2210. https://doi.org/10.1021/jacsau.4c00154
Zehetner, L., Széliová, D., Kraus, B., Hernandez Bort, J. A., & Zanghellini, J. (2024). Logistic PCA explains differences between genome-scale metabolic models in terms of metabolic pathways. PLoS Computational Biology, 20(6), Article e1012236. https://doi.org/10.1371/journal.pcbi.1012236
Mildau, K., Ehlers, H., Oesterle, I., Pristner, M., Warth, B., Doppler, M., Bueschl, C., Zanghellini, J., & van der Hooft, J. J. J. (2024). Tailored Mass Spectral Data Exploration Using the SpecXplore Interactive Dashboard. Analytical Chemistry, 96(15), 5798-5806. https://doi.org/10.1021/acs.analchem.3c04444
Predl, M., Mießkes, M., Rattei, T., & Zanghellini, J. (2024). PyCoMo: a python package for community metabolic model creation and analysis. Bioinformatics (Oxford, England), 40(4), Article btae153. https://doi.org/10.1093/bioinformatics/btae153
Coltman, B. L., Rebnegger, C., Gasser, B., & Zanghellini, J. (2024). Characterising the metabolic rewiring of extremely slow growing Komagataella phaffii. Microbial Biotechnology, 17(1), Article e14386. https://doi.org/10.1111/1751-7915.14386
Lázaro, J., Júlvez, J., & Zanghellini, J. (2024). Flexible Nets to Improve GEM Cell Factories by Combining Kinetic and Proteomics Data. In R. Gori, P. Milazzo, & M. Tribastone (Eds.), Computational Methods in Systems Biology - 22nd International Conference, CMSB 2024, Proceedings (Vol. 14971, pp. 137-154). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-71671-3_11
Sedlmayr, V. L., Széliová, D., De Kock, V., Gansemans, Y., Van Nieuwerburgh, F., Peeters, E., Quehenberger, J., Zanghellini, J., & Spadiut, O. (2024). Impact of nutrient excess on physiology and metabolism of Sulfolobus acidocaldarius. Frontiers in Microbiology, 15, Article 1475385. https://doi.org/10.3389/fmicb.2024.1475385
Activities of the group Biochemical Network Analysis
Showing entries 1 - 10 out of 135
Functional insights into Cereblon-mediated targeted protein degradation by chemical crosslinking and quantitative mass spectrometry
Stefanie Brandstetter
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Towards a novel tetraether lipid producer Haloferax volcanii
Ana Cristina Gouveia Carvalho
,
Jürgen Zanghellini
Joint DoSChem Retreat – 2026
Seminar/Workshop,
Poster presentation
25.2.2026 - 25.2.2026
Engineering Better AAV Factories: Predictive Flux Modeling Identifies HIF-1 as a Key Limiter of Productivity
Juan A. Hernandez Bort
,
Leopold Zehetner
,
Diana Szeliova
,
Jürgen Zanghellini
European Society of Gene & Cell Therapy: ESGCT Congress 32
Conference,
Poster presentation
7.10.2025 - 7.10.2025
Optimal allocation of enzyme resources in cells & Introduction to Growth Balance Analysis
Diana Szeliova
,
Hugo Dourado
CompSysBio 2025: Advanced Lecture Course on Computational Systems Biology
Lecture series, colloquium,
Talk or oral contribution
5.10.2025 - 5.10.2025
The Geometry of Cooperation: decoding microbial Interactions
Jürgen Zanghellini
,
Müller Stefan
,
Michael Predl
,
Diana Szeliova
24<sup>th </sup>Annual International Conference on Systems Biology (ICSB 2025)
Conference,
Poster presentation
5.10.2025 - 5.10.2025
Developing a XLMS Assay for the Characterization of Protein Conformations
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Klaus Rumpel
,
Jürgen Zanghellini
,
Franz Herzog
EMBO Practical Course: Integrative modelling of biomolecular interactions
Seminar/Workshop,
Poster presentation
28.9.2025 - 28.9.2025
Developing a XLMS Assay for the Characterization of Protein Conformations
Stefanie Brandstetter
,
Benjamin Neuditschko
,
Klaus Rumpel
,
Jürgen Zanghellini
,
Franz Herzog
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
FedBatchDesigner: A user-friendly dashboard for modeling and optimizing growth-arrested fed-batch processes
Andrea Caroline Graf
,
Julian Libiseller-Egger
,
Guido Schlögel
,
Maria Jose Rimon Martinez
,
Mathias Gotsmy
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
From genome to metabolism: Pan genome-scale metabolic model reconstruction of the extremophile genus S<i>ulfolobus</i>
Maria Jose Rimon Martinez
,
Leopold Zehetner
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Poster presentation
25.9.2025 - 25.9.2025
Hybrid models in bioprocess optimization
Julian Libiseller-Egger
,
Andrea Graf
,
Jürgen Zanghellini
5th DoSChem International Student Symposium 2025
Conference,
Talk or oral contribution
25.9.2025 - 25.9.2025
Projects of the group Biochemical Network Analysis
Showing entries 1 - 4 out of 4
Morpho-metabolischer Fingerabdruck von Ovarialkarzinom
Del Favero, G. (Project Lead), Köllensperger, G. (Co-Lead), Gerner, C. (Co-Lead) & Zanghellini, J. (Co-Lead)
15/09/22 → 14/09/27
Project: Research funding
Prokaryote proteomics at high temperature for single cells
Zanghellini, J. (Project Lead)
1/01/24 → 31/12/27
Project: Research cooperation
Circular Bioengineering
Köllensperger, G. (Project Lead), Ludwig, R. (Co-Lead), Bismarck, A. (Co-Lead), Zanghellini, J. (Co-Lead) & Woodward, R. (Co-Lead)
1/12/24 → 30/11/29
Project: Research funding
Fungi in museums and collections: a novel, highly sensitive, AI powered sensor system for the early stage detection of fungal contaminations
Zanghellini, J. (Project Lead), Sterflinger , K. (Co-Lead) & Kellner , E. (Co-Lead)
1/04/26 → 31/03/29
Project: Research funding
Showing entries 1 - 4 out of 4